PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BS_FF44610EF1.3
Common NameTaOBF1b
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bZIP
Protein Properties Length: 157aa    MW: 17410.5 Da    PI: 9.2474
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BS_FF44610EF1.3genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.44.3e-153088563
                            CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                  bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                            +re+r+ +NRe+ArrsR+RK++ ++eL ++v+ L+aeN +   +++ ++ +  ++++e+
  Traes_5BS_FF44610EF1.3 30 RREKRRLSNRESARRSRLRKQQHLDELVQEVARLKAENARVLARANDITGQFVRVDQEN 88
                            89*************************************99999998887777666665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.8E-172690IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.1972891IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.1E-112880No hitNo description
PfamPF001703.9E-113078IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.88E-113082No hitNo description
CDDcd147028.34E-173181No hitNo description
PROSITE patternPS0003603348IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006971Biological Processhypotonic response
GO:0009267Biological Processcellular response to starvation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000693Biological Processpositive regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MSSSSLSPGG GRLSGSDGDS GATFAAGDNR REKRRLSNRE SARRSRLRKQ QHLDELVQEV  60
ARLKAENARV LARANDITGQ FVRVDQENTV LRARAAELGD RLRSVNQVLR VVEEFSGVAM  120
DIQEECPPDD PLLRPWQIPY PANAMPIAAT ATHMLQY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14248RRSRLRK
24249RRSRLRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00419DAPTransfer from AT3G62420Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3341300.0AB334130.1 Triticum aestivum TaOBF1b mRNA for basic region/leucine zipper protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003579247.11e-95PREDICTED: ocs element-binding factor 1-like
SwissprotP240683e-84OCS1_MAIZE; Ocs element-binding factor 1
TrEMBLA9ZPJ41e-112A9ZPJ4_WHEAT; Basic region/leucine zipper protein
STRINGMLOC_51930.11e-102(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188635100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62420.13e-34basic region/leucine zipper motif 53
Publications ? help Back to Top
  1. Kobayashi F, et al.
    Development of abiotic stress tolerance via bZIP-type transcription factor LIP19 in common wheat.
    J. Exp. Bot., 2008. 59(4): p. 891-905
    [PMID:18326864]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]